CDK12

Protein kinase gene
CDK12
Available structures
PDBOrtholog search: PDBe RCSB
List of PDB id codes

4CXA, 4NST, 4UN0, 5ACB

Identifiers
AliasesCDK12, CRK7, CRKR, CRKRS, cyclin-dependent kinase 12, cyclin dependent kinase 12
External IDsOMIM: 615514; MGI: 1098802; HomoloGene: 128632; GeneCards: CDK12; OMA:CDK12 - orthologs
Gene location (Human)
Chromosome 17 (human)
Chr.Chromosome 17 (human)[1]
Chromosome 17 (human)
Genomic location for CDK12
Genomic location for CDK12
Band17q12Start39,461,486 bp[1]
End39,564,907 bp[1]
Gene location (Mouse)
Chromosome 11 (mouse)
Chr.Chromosome 11 (mouse)[2]
Chromosome 11 (mouse)
Genomic location for CDK12
Genomic location for CDK12
Band11 D|11 61.75 cMStart98,093,885 bp[2]
End98,169,330 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • buccal mucosa cell

  • sural nerve

  • secondary oocyte

  • epithelium of colon

  • ganglionic eminence

  • gastric mucosa

  • ventricular zone

  • Achilles tendon

  • skin of leg

  • tonsil
Top expressed in
  • zygote

  • secondary oocyte

  • ascending aorta

  • tail of embryo

  • Rostral migratory stream

  • aortic valve

  • genital tubercle

  • granulocyte

  • spermatocyte

  • primary oocyte
More reference expression data
BioGPS


More reference expression data
Gene ontology
Molecular function
  • transferase activity
  • protein kinase activity
  • nucleotide binding
  • kinase activity
  • protein serine/threonine kinase activity
  • protein binding
  • RNA polymerase II CTD heptapeptide repeat kinase activity
  • ATP binding
  • cyclin binding
  • cyclin-dependent protein serine/threonine kinase activity
  • transcription factor binding
  • protein kinase binding
Cellular component
  • nuclear speck
  • nuclear cyclin-dependent protein kinase holoenzyme complex
  • cyclin K-CDK12 complex
  • nucleus
  • nucleoplasm
  • fibrillar center
  • chromosome
  • cyclin/CDK positive transcription elongation factor complex
  • cyclin-dependent protein kinase holoenzyme complex
Biological process
  • phosphorylation of RNA polymerase II C-terminal domain
  • phosphorylation
  • mRNA processing
  • regulation of cell cycle
  • protein phosphorylation
  • regulation of RNA splicing
  • RNA splicing
  • protein autophosphorylation
  • regulation of MAP kinase activity
  • transcription elongation from RNA polymerase II promoter
  • positive regulation of transcription by RNA polymerase II
  • negative regulation of stem cell differentiation
  • positive regulation of transcription elongation from RNA polymerase II promoter
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

51755

69131

Ensembl

ENSG00000167258

ENSMUSG00000003119

UniProt

Q9NYV4

Q14AX6

RefSeq (mRNA)

NM_015083
NM_016507

NM_001109626
NM_001109628
NM_026952

RefSeq (protein)

NP_055898
NP_057591

NP_001103096
NP_001103098
NP_081228

Location (UCSC)Chr 17: 39.46 – 39.56 MbChr 11: 98.09 – 98.17 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

CDK12 cyclin-dependent kinase 12 is a protein kinase that in humans is encoded by the CDK12 gene.[5][6][7] This enzyme is a member of cyclin-dependent kinase protein family.

References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000167258 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000003119 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ Nagase T, Ishikawa K, Suyama M, Kikuno R, Hirosawa M, Miyajima N, Tanaka A, Kotani H, Nomura N, Ohara O (May 1999). "Prediction of the coding sequences of unidentified human genes. XII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro". DNA Res. 5 (6): 355–64. doi:10.1093/dnares/5.6.355. PMID 10048485.
  6. ^ Ko TK, Kelly E, Pines J (Oct 2001). "CrkRS: a novel conserved Cdc2-related protein kinase that colocalises with SC35 speckles". J Cell Sci. 114 (Pt 14): 2591–603. doi:10.1242/jcs.114.14.2591. PMID 11683387.
  7. ^ "Entrez Gene: CDK12 cyclin-dependent kinase 12".

External links

Further reading

  • Nakajima D, Okazaki N, Yamakawa H, et al. (2003). "Construction of expression-ready cDNA clones for KIAA genes: manual curation of 330 KIAA cDNA clones". DNA Res. 9 (3): 99–106. doi:10.1093/dnares/9.3.99. PMID 12168954.
  • Wissing J, Jänsch L, Nimtz M, et al. (2007). "Proteomics analysis of protein kinases by target class-selective prefractionation and tandem mass spectrometry" (PDF). Mol. Cell. Proteomics. 6 (3): 537–47. doi:10.1074/mcp.T600062-MCP200. PMID 17192257. S2CID 40974821.
  • Olsen JV, Blagoev B, Gnad F, et al. (2006). "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks". Cell. 127 (3): 635–48. doi:10.1016/j.cell.2006.09.026. PMID 17081983. S2CID 7827573.
  • Beausoleil SA, Villén J, Gerber SA, et al. (2006). "A probability-based approach for high-throughput protein phosphorylation analysis and site localization". Nat. Biotechnol. 24 (10): 1285–92. doi:10.1038/nbt1240. PMID 16964243. S2CID 14294292.
  • Kimura K, Wakamatsu A, Suzuki Y, et al. (2006). "Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes". Genome Res. 16 (1): 55–65. doi:10.1101/gr.4039406. PMC 1356129. PMID 16344560.
  • Beausoleil SA, Jedrychowski M, Schwartz D, et al. (2004). "Large-scale characterization of HeLa cell nuclear phosphoproteins". Proc. Natl. Acad. Sci. U.S.A. 101 (33): 12130–5. Bibcode:2004PNAS..10112130B. doi:10.1073/pnas.0404720101. PMC 514446. PMID 15302935.
  • Colland F, Jacq X, Trouplin V, et al. (2004). "Functional proteomics mapping of a human signaling pathway". Genome Res. 14 (7): 1324–32. doi:10.1101/gr.2334104. PMC 442148. PMID 15231748.
  • Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
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Receptor protein serine/threonine kinase (EC 2.7.11.30)
MAP2K
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